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Export any parameter to a wide-format table

Source: R/data-export.R
save_dataset_csv.Rd

Export any parameter to a wide-format table

Usage

save_dataset_csv(
  data = NULL,
  path,
  variable = c("area", "height", "intensity", "norm_intensity", "response", "conc",
    "conc_raw", "rt", "fwhm"),
  filter_data,
  qc_types = c("SPL", "BQC", "TQC", "NIST", "LTR", "PBLK", "SBLK", "UBLK", "MBLK"),
  include_qualifier = NA,
  include_istd = NA,
  add_qctype = NA
)

Arguments

data

MidarExperiment object

path

File name with path of exported CSV fil

variable

Variable to be exported

filter_data

Use QC-filtered data, based on criteria set via filter_features_qc(). Overwrites include_qualifier and include_istd.

qc_types

QC type to plot. When qc_types us NA or NULL, all available QC types are plotted.

include_qualifier

Include qualifier features. Is not used when filter_data = TRUE was applied.

include_istd

Include internal standard features. Default is TRUE. Is not used when filter_data = TRUE was applied.

add_qctype

Add the QC type as column