Get FC and p values from a t test contrast
Usage
volcano_plot(
d_FC,
p_adjust,
sig_FC_min,
sig_p_value_min,
symmetric_x,
x_min,
x_max,
point_size,
point_transparency,
scale_factor,
scale_factor_species_label,
squared = TRUE,
axistick = 1
)Arguments
- d_FC
data.frame with FEATURE_NAME, p and log2FC
- p_adjust
calculate and use FDR
- sig_FC_min
|FC| treshold
- sig_p_value_min
P value treshold
- symmetric_x
make x axis symetric around 0
- x_min
x min
- x_max
x max
- point_size
point size
- point_transparency
point alpha
- scale_factor
scale factor for fonts
- scale_factor_species_label
scale factor point labels
- squared
make plot a square
- axistick
axis ticks