Function reference • lancer

General Workflow

Functions used for tidy workflow

create_curve_table(): Create Curve Table

summarise_curve_table(): Summarize Curve Table

evaluate_linearity(): Evaluate Linearity Based On Curve Summary Data

write_summary_excel(): Write Curve Summary To Excel

add_ggplot_panel(): Add A ggplot Panel Column

add_plotly_panel(): Add A plotly Panel Column

view_ggplot_pdf(): View ggplot Curve Plots As Pdf

view_trellis_html(): View ggplot or plotly Curve Plots As Trellis

Summarise Curve Data

Functions used to summarise curve data

summarise_curve_table(): Summarize Curve Table

summarise_curve_data(): Summarise Curve Data For One Group

create_cubic_model(): Create Cubic Model

create_linear_model(): Create Linear Model

create_quad_model(): Create Quadratic Model

calculate_concavity(): Calculate Concavity

calculate_gof_linear(): Calculate Linear Model's Goodness Of Fit

calculate_mandel(): Calculate Mandel Fitting Test

calculate_pra_linear(): Calculate Linear Model's Percent Residual Accuracy (PRA)

evaluate_linearity(): Evaluate Linearity Based On Curve Summary Data

Plotting

Functions used to plot curves and summary tables

plot_curve_ggplot(): Plot Curve Using ggplot2

plot_curve_plotly(): Plot Curve Using plotly

plot_summary_table(): Plot Curve Summary Table For One Group

plot_summary_table_char(): Plot Curve Summary Character Table For One Group

plot_summary_table_num(): Plot Curve Summary Numeric Table For One Group

Cognostics Creation

Functions used to convert columns to class cognostics

convert_to_cog(): Convert To Cognostics

create_default_cog_df(): Create Default Cognostics Data Frame

update_cog_auto(): Update Cognostics Automatically

update_cog_manual(): Update Cognostics Manually

Output in Excel

Functions used to write curve summary table to Excel

write_summary_excel(): Write Curve Summary To Excel

calculate_column_max_char(): Calculate Column Maximum Character

format_char_cell_colour(): Format Character Cell Colour

format_num_cell_colour(): Format Numeric Cell Colour

format_num_cell_style(): Format Numeric Column Cell Style

mark_near_zero_columns(): Mark Near Zero Columns

Output in pdf

Functions used to help output ggplots plots to pdf

view_ggplot_pdf(): View ggplot Curve Plots As Pdf

create_reg_col_vec(): Create Regression Colour Vector

create_page_layout(): Create the page layout for the pdf document

Output in trellis

Functions used to help output ggplots or plotly plots to trellis

view_trellis_html(): View ggplot or plotly Curve Plots As Trellis

Validation

Functions used to validate datasets

validate_cog_df(): Validate Cognostics Data

validate_curve_batch_annot(): Validate Curve Batch Annotation

validate_curve_data(): Validate Curve Data

validate_curve_data_wide(): Validate Curve Data Wide

validate_curve_table(): Validate Curve Table

validate_trellis_table(): Validate Trellis Table

Utilities

Utilities functions

create_char_seq(): Create Cyclic Character Sequence

Experiment functions

Functions that are experimental

calculate_adl(): Calculate Average Deviation From Linearity

calculate_adl_kroll_test(): Calculate Kroll's Linearity Test

Defunct and deprecated functions

Functions that are not in used (defunct) or deprecated

validate_dilution_annot(): Validate Dilution Annotation

validate_dilution_table(): Validate Dilution Table

validate_dilution_data(): Validate Dilution Data

validate_lipid_data_wide(): Validate Lipid Data Wide

create_dilution_table(): Create Dilution Table

summarise_dilution_data(): Summarise Dilution Curve Data For One Group

summarise_dilution_table(): Summarize Dilution Table